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Large Language Model in Medical Informatics: Direct Classification and Enhanced Text Representations for Automatic ICD Coding

arXiv.org Artificial Intelligence

Addressing the complexity of accurately classifying International Classification of Diseases (ICD) codes from medical discharge summaries is challenging due to the intricate nature of medical documentation. This paper explores the use of Large Language Models (LLM), specifically the LLAMA architecture, to enhance ICD code classification through two methodologies: direct application as a classifier and as a generator of enriched text representations within a Multi-Filter Residual Convolutional Neural Network (MultiResCNN) framework. We evaluate these methods by comparing them against state-of-the-art approaches, revealing LLAMA's potential to significantly improve classification outcomes by providing deep contextual insights into medical texts.


Methods in Medical Informatics

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Nico Pfeifer's research group Methods in Medical Informatics founded in 2017! Our lab is part of a welcoming research environment on the charming Tübingen campus, with plenty of collaboration opportunities beyond international borders. Our work also contributes to the Cluster of Excellence Machine Learning: New Perspectives for Science by developing and extending state-of-the-art AI methods in biomedical settings.


Clinical Deterioration Prediction in Brazilian Hospitals Based on Artificial Neural Networks and Tree Decision Models

arXiv.org Artificial Intelligence

Early recognition of clinical deterioration (CD) has vital importance in patients' survival from exacerbation or death. Electronic health records (EHRs) data have been widely employed in Early Warning Scores (EWS) to measure CD risk in hospitalized patients. Recently, EHRs data have been utilized in Machine Learning (ML) models to predict mortality and CD. The ML models have shown superior performance in CD prediction compared to EWS. Since EHRs data are structured and tabular, conventional ML models are generally applied to them, and less effort is put into evaluating the artificial neural network's performance on EHRs data. Thus, in this article, an extremely boosted neural network (XBNet) is used to predict CD, and its performance is compared to eXtreme Gradient Boosting (XGBoost) and random forest (RF) models. For this purpose, 103,105 samples from thirteen Brazilian hospitals are used to generate the models. Moreover, the principal component analysis (PCA) is employed to verify whether it can improve the adopted models' performance. The performance of ML models and Modified Early Warning Score (MEWS), an EWS candidate, are evaluated in CD prediction regarding the accuracy, precision, recall, F1-score, and geometric mean (G-mean) metrics in a 10-fold cross-validation approach. According to the experiments, the XGBoost model obtained the best results in predicting CD among Brazilian hospitals' data.


AIM in Medical Informatics

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A large amount of patient-related information is collected by healthcare operators in their everyday activities, which span over a wide spectrum of medical processes, such as wellness check-ups or examinations at healthcare hospitals or medical offices, just to name a few. For instance, when a patient undergoes a medical examination for the first time, the physician usually creates a patient file including his medical history, current treatments, medications, diagnosis, and other relevant information [1]. Considering that disease diagnosis is crucial for health condition monitoring, it is natural to envisage that such large amount of data can be profitably used to guide data-driven disease classification tasks in the quest for early and accurate diagnoses, taking care of the complex interactions among clinical, biological, and pathological variables. Indeed, with the aim of identifying the best services and treatments for the patients, recent advances in medicine have proposed various models for personalized, predictive, and preventive medicine that make use of electronic health records (EHRs) and high-dimensional omics data [2]. However, accessing and using EHRs and omics data can be rather challenging in practice, because they are heterogeneous and usually stored in different data formats.


Natural Language Processing for Smart Healthcare

arXiv.org Artificial Intelligence

Smart healthcare has achieved significant progress in recent years. Emerging artificial intelligence (AI) technologies enable various smart applications across various healthcare scenarios. As an essential technology powered by AI, natural language processing (NLP) plays a key role in smart healthcare due to its capability of analysing and understanding human language. In this work we review existing studies that concern NLP for smart healthcare from the perspectives of technique and application. We focus on feature extraction and modelling for various NLP tasks encountered in smart healthcare from a technical point of view. In the context of smart healthcare applications employing NLP techniques, the elaboration largely attends to representative smart healthcare scenarios, including clinical practice, hospital management, personal care, public health, and drug development. We further discuss the limitations of current works and identify the directions for future works.